Genome sequence and annotation of Victoria cruziana

Category

Is referenced by:

Nowak M. S.*, Harder B.*, Meckoni S. N.*, Friedhoff R., Wolff K., Pucker B. (2024). Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana. bioRxiv 2024.06.15.599162; doi: 10.1101/2024.06.15.599162.

Date Issued:

19.06.2024

DOI:

10.24355/dbbs.084-202406040628-0

Language:

English

Type of Resource:

Text

Keywords:

1. Victoria cruziana

   Typ

   Schlagwort

1. anthocyanin biosynthesis

   Typ

   Schlagwort

1. anthocyanin biosynthesis

   Typ

   Schlagwort

1. flavonoid biosynthesis

   Typ

   Schlagwort

1. long read sequencing

   Typ

   Schlagwort

1. direct RNA sequencing

   Typ

   Schlagwort

1. Nymphaeaceae, color change

   Typ

   Schlagwort

DDC:

580 Pflanzen (Botanik)

Hosting institution:

02 - Life Sciences

Type:

Text Gene expression data of plant species

Research Object:

Organism Victoria cruziana

Data Origin:

Experiment and Measurements The genome of a Victoria cruziana plant was sequenced with nanopore long reads (R9.4.1 flow cells, MinION Mk1B) based on high molecular weight DNA extracted with a previously established protocol (https://dx.doi.org/10.17504/protocols.io.bcvyiw7w).

Methods/Processes:

The genome sequence was assembled with NextDenovo2 and the gene models were predicted by BRAKER3 using additional hints derived from RNA-seq data of flower samples. The functional annotation was predicted based on sequence similarity to well characterized Arabidopsis thaliana sequences. Please see our publication for additional details.