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MetAMDB: Metabolic Atom Mapping Database

ORCID
0000-0002-2938-9940
Affiliation/Institute
Department of Bioinformatics and Biochemistry, Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig
Starke, Collin;
ORCID
0000-0001-6023-1538
Affiliation/Institute
Department of Bioinformatics and Biochemistry, Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig
Wegner, Andre

MetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome-scale) and can subsequently be used in standard 13C metabolic flux analysis software.

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Original:
Metabolites, 2022, 12(2), 122.
(2022)
Date Issued:
27.01.2022
URN:
urn:nbn:de:gbv:084-2022032913471
DOI:
10.3390/metabo12020122
Language:
English
Type of Resource:
Text
Extent:
9 Seiten
Place Term:
Basel
Publisher:
MDPI
Keywords:
  1. Database
    Typ
    Schlagwort
  1. Metabolic Model
    Typ
    Schlagwort
  1. 13C Metabolic Flux Analysis
    Typ
    Schlagwort
  1. Aam
    Typ
    Schlagwort
  1. Systems Biochemistry
    Typ
    Schlagwort
  1. Rxn
    Typ
    Schlagwort
  1. Atom Mapping Model
    Typ
    Schlagwort
  1. Atom Mappings
    Typ
    Schlagwort
  1. Atom Transitions
    Typ
    Schlagwort
DDC:
570 Biowissenschaften; Biologie
Location:
Publications of TU Braunschweig
Sponsors:
Publikationsfonds der TU Braunschweig
URL:
http://publikationsserver.tu-braunschweig.de/get/70586
Hosting institution:
02 - Life Sciences

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